Modern genomic and omics-based technologies for millet breeding and genetic improvement.
- 2026-05-20
- Frontiers in plant science 17
- Anand Kumar
- Pandiyan Muthuramalingam
- Laxmidas Verma
- Reetesh Kumar
- Naveen Kumar
- Jyotsna Misra
- Karthikeyan Ravi
- Hyunsuk Shin
- Manikandan Ramesh
- PubMed: 42245112
- DOI: 10.3389/fpls.2026.1782766
Study Design
- Type
- Review
Millets are a diverse group of small seeded grasses that have long served as vital staple foods and forage crops across a wide range of agro-ecological regions. Known for their exceptional adaptability to marginal and resource poor environments, millets have historically supported farming communities in arid and semi-arid regions. Despite these advantages, they remain underutilized in modern agriculture due to limited genomic resources, harsh growing conditions, and insufficient technological support for their improvement. However, growing concerns over climate change, malnutrition and the need for sustainable agriculture have renewed global scientific interest in millet research and breeding. Recent breakthroughs in molecular biology such as marker-assisted selection (MAS), Genome-wide association studies (GWAS), genomic selection (GS), genetic engineering, omics technologies, speed breeding, and machine learning (ML) have significantly transformed the landscape of millet improvement. Advances in MAS, high-throughput genotyping, transcriptomics, proteomics, metabolomics, and phenomics have enabled more profound insights into the genetic architecture of key agronomic traits. These tools have facilitated the identification of genes, regulatory networks, and metabolic pathways governing drought tolerance, nutrient use efficiency, disease resistance and other essential stress responses. The integration of next-generation sequencing and comparative genomics has further expanded millet research through the development of reference genomes, pangenomes, and comprehensive germplasm characterizations. Pangenomic approaches, in particular, have uncovered structural variations and novel alleles that contribute to phenotypic diversity, offering valuable targets for breeding climate-resilient cultivars. High-resolution phenomic platforms have enhanced the precision of trait evaluation, enabling rapid screening of large populations under diverse environmental conditions. Additionally, genome editing technologies, especially CRISPR/Cas systems and multiplex CRISPR/Cas, have opened new avenues for precise genetic improvement by enabling targeted gene modification to enhance stress resilience and yield traits. Therefore, these integrated omics-driven and molecular breeding strategies are reshaping the millet improvement. With modern biotechnological innovations, researchers are now better equipped to develop high-yielding, nutrient-rich and climate-resilient millet cultivars. These advancements position millets as strategic crops that can strengthen global food and nutritional security while promoting sustainable agricultural systems in the face of mounting environmental challenges.